PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3422 (1009 amino acids)

SeqID: GFF3422 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 39932236: Taurine--pyruvate aminotransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3422
MTAIHLAEDHWAAVLHDHWGIHAELSRLDGEYDLNYRALTPDGQGYILKAMRPGCVSDLV
DMQIAALAHLQNTDPGLPVPRTVAASNGELCLSLQDDTGEDRLVWVQTLLPGRCYAKSAP
KSAELIREIGATLAGTTRALKDFVHPALERRFKWDLMTADWITDDITCIADDSRQQLIAE
ICADFSSLKPQLEALPRQAIHNDANDYNILVTGELSEPRVVSGLIDLGDMCAAPRICDLA
IAAAYVVLDHPQPQRALAALVSGYHSVTPLTEEELGLLWPLLRMRLAVSVVNSTLEAKEN
PDDPYVTISQEPAWRFLDQPSEHPALITARLRATCGLTVVDGTDRVLAYLETHSGDFFPL
MGRDLTDFPMGSLSVEESTWPQNPFDMPLAEAAEVGQEFSGANGANWWLGYYREPRLIYT
APAFRKGEYLASDRRTVHLAVDVFAPAGQPLHAPLAGEVQVVEDRANHLDYGGVVILKHH
TDSGDAFYTLYGHLDPECCTRLSVGDKIAKGAPFCQLGTADQNGGWAPHVHFQLALSTEG
IEADWPGVADPDDLALWTALCPNPAPLLNLPAAQVSYQPTDKSTVLAGRRAHFGGNLSLT
YRDPVMLLRGWKHHLFDEWGRPYLDAYNNVPHVGHAHPRIQAIAADQLKRMNSNTRYLHP
AQNAFAEKILSKMPDHLEVCFFVNSGTEANELALRLARAHTGAKGMVTPDHGYHGNTTGA
IDISAYKFNAKGGVGPSDWVELVEVADDYRGTYGRDDPQRAQKYADLVDPAIAKLQASGH
GVAGFIAETFPSVGGQIIPPKGYLPAVYEKIRAAGGICIADEVQTGLGRLGEYYFGFEHQ
GASPDIVVLGKPIGNGHPLGVLVTTRAIADSFAQGPEFFSTFGGSTLSCRIGTEVLNIVD
EEGLQENARQRGADLLNGLRDLQSRHQAIGDVRGMGLFIGVELIRTDGSEASEICAYVKN
RMRDHRILIGSEGPKDNILKIRPPLTIDAEGIEMILKTLDSILSELSDS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory