PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3431 (419 amino acids)

SeqID: GFF3431 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 129041: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3431
MGTHVIKMPDIGEGIAEVELSVWHVKVGDMVVEDQVLADVMTDKAMVDIPSPVHGKVISL
GGEPGEVMAVGSILISIEVEGAGNAKEAPAAKETPKAAPVVEAKPAPVAVESKPAPVVAT
QPPVARAADERPLASPAVRKHALDAGIQLRLVQGSGPAGRILHEDLDAYLQQGASKSSTA
TNPYAERNTEEQIPVIGMRRKIAQRMQDATRRAAHFSYVEEIDVTALDELRVHLNEKHGA
TRGKLTLLPFIVRAMVVALRDFPQINARYDDEAQVITRLGAVHVGVATQSDVGLMVPVVR
HAEARSLWGNAEEIARLATAARNGKASRDELSGSTITLTSLGALGGIVSTPVLNLPEVAI
VGVNRIVERPMVIKGQIVVRKMMNLSSSFDHRVVDGMDAAQFIQAIRGLLEQPASLFLE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory