PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3458 (526 amino acids)

SeqID: GFF3458 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3458
MTTISSETPINGKSPVHLALRRVAIDTYRENVAYLHRDCAACRAEGFQALAKVEIRVNGK
RILASLNLVDDPAIVGCDELGLSEDAFAQLGAEAGVPASISQAEPAASIPALHRKIAGER
LRREDFLAIMRDIAEHRYSKIELTAFVVACNQGELDREEVFFLTDAMIQVGRRLDWREHP
VVDKHCIGGIPGNRTSMLVVPIVAAHGMLCPKTSSRAITSPAGTADTMEVLANVELPFER
LCEMVREERGCLAWGGTSELSPADDVLIAVERPLSIDSPGQMVASILSKKIAAGSTHLLL
DIPIGPTAKVRSMAEAQRLRKLFEFVASRLGLTLDVVITDGRQPIGNGIGPVLEARDVMQ
VLQNDPAAPIDLRQKALRLAGRMLEFDPDVRGGDGYAIARDILDSGRALKKMHSIIAAQG
SKPFDHNHPPLARLSFDVLAERSAVVTGIDNLQLARIARLAGAPKVQGAGVDILRKLGEP
VQAGDCLYRVYADFPADLAFARQATERASGVSLGSADQVPSVFVEF