PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3468 (367 amino acids)

SeqID: GFF3468 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595941: probable enoyl-CoA hydratase/isomerase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3468
MSVEAEELACREGHMGVLTLNSPGTLNALSEHMIEQIQDILDRWANDDRICIVVIQGAGE
RAFCAGGDIRELYDAILDGQEPEKPVRFFSREYRMDYNIHRFPKPVLGIAHGVVMGGGLG
VFSGCRYRLVTPDVTLAMPEITIGLFPDVGASWFLKRLPGRLGLFMGLTGARLNVSDTLR
VGLADMAILPEDRDRLLDRLASERWTGQTAADDNRLFRLLNQIQTPDYRTLPPSHLARHE
QRIARLSAGDELPDIVDQLLAAEVDCDWWHACMNTLRNGCPVSAWLVWTQLQKAQQMSLK
DAFRMELAMVSECIRRPDLTEGIRALAIDKDRQPKWSYPSVADVPEDVVAAHFTPEWDDE
TDPMGLE