PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3476 (423 amino acids)

SeqID: GFF3476 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 62288063: D-amino acid dehydrogenase small subunit]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3476
MHIAVVGGGVVGMTTAYELNRRGHQVTVLERHSMAGNETSKANAAQRSYGVVYPWADPAI
VFKAIPWILKQDGPLKLRFPPSVETLKFMFATLRYAWSPGLFGLNRRAMLRLGIHSRERF
MALEKELDLSFDGDHQGLLHLASTPEALEGYRTTHELLNELGIPSRLLTPEQVRDAEPGM
VGNGPLYGALSYDTDGTGDCHKFSRELAKVCEAKGIVVRYNVEAEKLIADDQRVSAISVR
NSDGVMEALEVDAVVISAGCWSNHLVQPLGLELPIYPVKGYSLTVPMKDPEQGPASTIHD
DNFKVVSTRLGDRLRATGFVELADFNRDIPEARLATIRKSVESRFPGCADLDAAETWTGF
RPMTPDGPAIIGRGPRENLYLNTGHGTFGWTLSAGSADVIAQVIEGEEPSVCLDAFRPGR
FRE