PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3501 (538 amino acids)

SeqID: GFF3501 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 416604: Alcohol dehydrogenase [acceptor]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.15
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3501
MEADYVIVGGGSAGSTLASRLSEDPDVTVCLLEAGGRGDGLLVRAPAAVVAMLPGRPKIN
NWAYETVPQPGLNGRRGYQPRGKGLGGSSAINAMLYIRGHSKDYDEWAALGCEGWDWQSV
LPYFRKSENNERGDDALHGAAGPLQVSNQKSPRPITDAFVKAGRSLQIRHREDFNSGDNE
GIGHYQVTQFHRDDRNGERCSAAAAYLHPVMDRPNLTVITRAQASSVAFEGKRAVGVRYS
QGGRAHMVRARREVILSGGAFNSPQLLQLSGVGRPDDICPHGIDMVHELPGVGQNLQDHL
DFTLAYKSRDRDNFGISLPGSVSLLRHIWNWRKTGRGMIATPFAEGAAFLKTDPNKKRAD
VQLHFVISIVDDHARKLHMGHGFSCHICVLRPKSRGSVGLNSADPKAAPRIDPQFLADPE
DLAVLIKGVRKTRQIMAAEPLAGYVHRELFINGEPDDAALEQHIRARADTIYHPVGTCKM
GTDPLSVVDPSLRVHGLQGLRVVDASVMPRLIGGNTNAPTIMIAEKAADIIRGAWARS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory