PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3535 (306 amino acids)

SeqID: GFF3535 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 33112656: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3535
MRMLRSIPTLAACVLAFSSSLLSAAPIDLNDGQHAVHLPDAPKRVVVLEFSFLDSLAAVD
VTPVGAADDGDANRVLPRVRQAIGQWKSVGLRSQPSIEEIARLKPDLIVADLNRHQALYS
DLASIAPTLLLPSRGEDYQGSLKSAELIGKALGKSAQMEARIQKNRENLNAIAQQIPAGA
SVLFGVAREDSFSVHGPDSYAGSVLEAIGLKVPSVRANAAPTEFVSLEQLLALDPGWLLV
GHYRRPSIVDSWSQQPLWQVLGAVRNKQVAEVDGDSWARNRGVLASEQIAEDALAILKGG
KAVLSQ