PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3538 (259 amino acids)

SeqID: GFF3538 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 123174: Histidine transport ATP-binding protein hisP]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3538
MAHQSEELIIEALDIHKSFGALQILKGISLQVRRGEVVVLIGASGSGKTTFIRCINLLED
IQGGRIRVNGRAMGYRERSDGSLVRDSERNIARQRRDIGMVFQRFNLFPHMTALENIIEA
PIQVLGTPRAQALEQARGLLARVGLADKASHYPAMLSGGQQQRVAIARALAMKPQAMLFD
EPTSALDPETVGEVLQVMKELAEEGMTMVVVTHEMGFAREVADRVVVLDQGELIEQGPPE
QIFSHPSHPRTRAFLSRVL