PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3601 (470 amino acids)

SeqID: GFF3601 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599679: |Glu-tRNA(Gln) amidotransferase subunit A|5013974 - 5015428]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3601
MRISEILREGALRSRIEALSFGMRSGRLSPVDVFRETRFKQGYSKNQGILVEPLGETSLA
QARSSEKRYLNDEQFGLLDGIPFGVKDLIDVEGCTTSRGSLLYRNAPPAKRNAEAVERLG
FQGMVFGGKTNLSELAFSGVGTNDLFGSPINPRATTGKYITGGSSSGSAAGVASGLWPVS
LGTDTSGSSRIPAAFCGVVGFKPSFDRYPLRGVAPLAPSLDHLGINALTVQDCVILDQAL
RGLAPIPKFRMLSEQTEFLVPRNKSIQPRDPHIKDNFDKTLDLLSNLGFEIHEVDFSPYA
EVDRLFEIHGSLVAHEAAQQYEALFENGLTSYIDPKILQRLKEGTLLNRKSYALLQKIRR
NLRAELSSSIGNKILLQPTVKILPPAIESVLKGVEEFKAFNKLILGNTMYANYLGMPAIA
IPIGHAPNGFSTSIQLSAASGKDDFLLKTALFLEAALSKQNIYTPDTVSH