PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3619 (494 amino acids)

SeqID: GFF3619 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 20141685: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3619
MSVDGLIAAYFDTGALPDLPRDHFIDGRAVAPGAGGRMESFDPGRGTAFDDFAAGDAADV
DHAVTSAVAGFEIWSATPPARRCAILNEAARLMRHEAEHLAVVECVDSGKTLAEARGDIA
GSARLLEYYAGAADKLDGRSVNLGNDNAAFTLREPVGVTAHIVPWNYPSSTLVRGIAPAL
AAGCSAVVKPAETTPFTALMIADLLIRAGLPAGVVNVVTGTGIAAGAPLVRDPRVRHVTF
TGSVATGVGVMQSVAPNVTGLTLELGGKSPLVAFGDANVDAVVEGALWAIFSNAGQICSA
GSRLVIHRSLHAEVRDKLVARAQRLRVGHGLRGPDIGAVNSARHLAQIDDHVSRARTRGV
EIVTGGEILTDVESGKGWFYAPTILDDLAANDDAVLQEIFGPVLAIQVFEDEAEALALAN
GTEFALAAGIYTRDIATALRMARRVDAGQVTVNDYWAGGIELPFGGNRKSGFGREKGLEG
LDAYTRSKAVTLAV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory