PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3731 (508 amino acids)

SeqID: GFF3731 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598786: probable hydroxyacyl-CoA dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3731
MFERIGVVGAGAMGRGIAQLFAGAGKQVWLHDSRSESISDALRFNRELLERGVAKGRLSV
AELDATLARMQAAPALADLSGCDLVIEAIVENLEIKQALFVELEALLAEDAVLATNTSSL
SVTRIAAACRLPGRVAGFHFFNPVPLMKLVEVVRGERSDPQVIQRLVKLAEDAGHFPAIT
PDTPGFLVNHAGRAYSTEAQRILAEGIADAEQIDRILRDGPGFRMGPFELFDLTGLDISH
AVMESVYQQFYQDPRYTPSYQAAQRVAAGLLGRKTGQGYYRYENGQQIRTPEPQFSPVRI
ERPFWLDSQDPALRSQLAALLQAAGAQLESGEVPSARAICLITPLGEDASSMIARLGLPA
ERSVALDQFCDFDRRRVLMRQPALAAAIEAQARQALGSDGVPVEVINDSPGFVSQRVVAS
IVNLGCEIAQKGIADPQTLDRAVTLALGYPKGPLGFAEHYGAARILAILQAMQGCYGGEA
RYRPSPWLRRRVQLSLPLTAADQPAALR