PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3734 (610 amino acids)

SeqID: GFF3734 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 3915705: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3734
MCGIVGAVSERDVQGILLEGLRRLEYRGYDSAGMAVIGGDHSVQRAREVGKVAALAEAME
ANPLAGHLGIAHTRWATHGEPSQINAHPHMSGDRLAIVHNGIIENYQELREELRADGFEF
TSQTDTEVVAHLIEKHYRTLGNLHDSVRSAIARLRGAYALAVVHADEPEHLVVCREGSPL
VIGVGIGENFIASDQLALLPVTDRFMFLEEGDIADIRKDGIAILDRDGKAVEREVTRFEH
GADSADKGEYRHFMLKEIYEQPKVIKATMEGRVTRTRVLEQALGTEAANLLENVRHVQII
ACGTSYHAGMVARYWIEELAGVACSVEVASEFRYRKHVIQQDTLFLCISQSGETADTLAA
LRQAKKAGFRAALAICNVPGSSLVRESDLVIMTQAGPEIGVASTKAFTTQLTALLIFTLA
LARHNGLPEEQEAEIVEALHLVPGQVSDVLALDGEIAEMSKAFMDKNHSLFLGRGSQFPV
ALEGALKLKEISYIHAEAYPAGELKHGPLALVDSEMPVVTVAPNNDLVEKLKSNLEEVRA
RGGELFVFADKKADVKAEEGLHVMQIPSVHPITAPIVYTVPLQLLSYHVAVLKGTDVDQP
RNLAKSVTVE