PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3737 (857 amino acids)

SeqID: GFF3737 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [2 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600515: phosphomannomutase AlgC[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            6.49
    CytoplasmicMembrane    3.24
    OuterMembrane          0.14
    Extracellular          0.14
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3737
MALFKRTAKDSGVLNPASTRTKPAGVTIKPLLGGLASGLIGLGAAAALLWLGLQNAQQQQ
QAQLSQAWGQSQAGALQQALRQQRAETQALVDRQQLADVLRGDAERRRDAEERLLQLPGV
VDAHLNIRGRAVPDTNRPGPLNFAALDLLQRVEAGQSPAPEAYKVDNRWLLYSAVPLRAE
GQQAIRGTLLLVSDLERLFATLPALPAEAGQLRLTQQFSGTQEQLLLQRGAPAEGATAVT
LSSGNANWKLVYLPGSEAAQATLSPLLLIGAALLALAGMLIGLQLVLGSQQRKLREDVMQ
ISRLLQELSTGKTIQVPALSLPVLDALARNMVRLPVRPAGPAPTQAPAAAPAVRPAKPTE
YVDPRLPETDILDIDILDEDQDIFGLDTKERETAMSSAKAPNLPASIFRAYDIRGVVGDS
LTTETAYWVGRAIGSESLAKGEPNVSVGRDGRLSGPELVQHLIQGLLDSGCDVSDIGMVP
TPVLYYAANILAGKSGVMLTGSHNPPDYNGFKIVIAGDTLANEQIQTLRKRIENNDLSSG
VGKVEQVDVLERYFQQIRSDIAMAKPMKVVVDCGNGVAGVIAPRMIEALGCTVIPLYCDV
DGNFPNHHPDPGKPENLVDLIAKVKSEKADLGLAFDGDGDRVGVVTNAGTMIYADRLLML
FAKDVVSRNPGADIIFDVKCTRRLTPLISGYGGRPVMWKTGHSLIKKKMKESGALLAGEM
SGHIFFKERWFGFDDGIYSAARLLEILSQDKRDAEQVFAAFPCDISTPEINITVTEESKF
TIMDALQRDAQWGEANLITLDGVRVDYPKGWGLIRASNTTPVLVLRFEADSEEELSRIQD
VFRAQLLNVAPDLKLPF

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory