PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3754 (689 amino acids)

SeqID: GFF3754 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600213: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3754
MTFTLSEQENVGVLGARKYAETLFSDHYPESTISATSSRPIVHSDSLPGAFRQWQCPGIG
VKHKATNGGCPPKIVEKDTEDSAMPVYKAPLRDMKFLLNEVFDYPGHYATLTSGENATPD
IVDAILGECGKFCEEVLSPLYLSGDEEGCKLDNGEVTTPAGYRDAYQQYAMGGWQGLSAP
EEYGGQGLPASMGLLKQEMMGTANWPFSMYPGLSLGAMNTIFLHGTEDQKQTYLAPLTEG
RWAGTMCLTEPQCGTDLGQVKTKAEPQADGSYRLTGTKIFISSGDHDLTENIVHIVLARL
PDAPKGTRGISLFIVPKFLPDSNGDVGERNGVVCGSLEKKMGIKASATCVLNFDGATGFL
IGPENDGLNCMFTFMNTARIGTAIQGVGPAELSYQWALAYAKDRRSMRALSGKKEPDQVA
DSLIHHADVRRMLLTQKAIAEGGRAMLYYAARLADHMVEGFTEGDEKKADKYDDKLGFLT
PILKGFLTELGCEAANLGVQVFGGHGYIREHGMEQIVRDTRIATLYEGTTGIQALDLLGR
KVLLMTQGGAVREFTLNIANFARKHLTDKRLRPWALELLKLTGQWNLLTVRIMLAARKDR
DVVSSASYDFLMYSGYVTMAYIWLRQAAVAVDKLDNGGEESTGFYQAKLATTEFYFERLL
PRAQSHATSMLSPSKNLMQLDAEDLAFTG