PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3761 (393 amino acids)

SeqID: GFF3761 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 45593149: Crotonobetainyl-CoA dehydrogenase (Crotonobetainyl-CoA reductase)]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3761
MAGKASFNWIDPLLLDQQLTEEERMVQGSAAQFAADKLAPRVLEAFRHEQTDPAIFREMG
ETGLLGATIPEAYGGSGLNYVCYGLIAREVERIDSGYRSMMSVQSSLVMVPIYEFGNEAT
RQKYLPKLASGEYIGCFGLTEPNHGSDPGSMVTRAKKVDGGYRLSGSKMWITNSPIADVF
VVWAKDDAGEIRGFVLEKGWEGLSAPTIHGKVGLRASITGEIVMDNVFCPEENAFPDVRG
LKGPFTCLNSARYGISWGALGAAEFCWHTARQYTLDRQQFGRPLAANQLIQKKLADMQTE
ITLALQGCLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARMARDMLGGNGISDEFGVAR
HLVNLEVVNTYEGTHDVHALILGRAQTGIQAFF