PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3781 (978 amino acids)

SeqID: GFF3781 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 131476: Phosphoenolpyruvate-protein phosphotransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3781
MISDHICFTIDFKHADTIQQTKTDTQYQNKKRGNLMLTLTANDVRLGATASDWQDALQQA
ARDLERAGRTSPEYLAGMNAREQQSSTVLGNGIAIPHGTPESRDAVLETGVRILQFPEGV
SWHDGARVHVLVAIAAQSDEHLDILRHLTRVLDKPGLAEKLGHATDATELVALLSKAPAV
AKCDSETLCLGIDASTPNELALIAAARLQSLRCVDTDFLASIVGQPPVDLGQGFWLTHHT
VGARRPTLSLATPKRATAELRGVFCLAGPGDECHDLLERIDTFLAGDEPIQGLSAEALLA
RLSGEAADAVTAKVTLLNTHGLHARPAKQLVQEARRHNASIRLRLLEGEGAAVSATSLTR
VIGLGARRGQTLLLSATGDDASQAIQSLTSAIEGGLGEKVSPLRSADPQTKVPEAEQAPA
LTDDQPVKAVAASPGLALAPAFVMRQPTLEYPQFAEDSEQQIQRLNQAVDSADGQLRTLI
RQAEGGEAAPILSVHVEMLQDEDLYQATLEAINEGASAEAGWWKAIDTAARGQEALADRL
LAERAADLRDVGRRVLSNLCGVAMPTPPDTPYILVADDLGPSDVARLDTTRVRGLVTARG
GATSHSAILARALGLPAVVGTGERILTILNGSDLVVDGERGCLVPNPGAERCEKIRRRLQ
QLDALQAEAHENRNQPATTVDGHTIEVCANLGNTAHTPDAVERGADGVGLLRTEFIFMAH
PEAPDLATQVTEYQHAFDALNGLPLVARTLDVGGDKPLDYWPLPQEDNPFLGMRGIRLSL
TRPDILETQVRALLTAAGDRPLRIMFPMVKDLEEFRAARAIVTKVQSEVSASNVQVGVMI
EVPSCALLASTLAPEVDFFSIGTNDLTQYTLAIDRGHGQLSAESDGLHPSVLRLIRMTVE
AAHAHNRWVGVCGELASDPQAIPVLVGLDVDELSVTSRRVPLVKACIRGLNLENARQQAE
KALSLATASEVRDALEAW