PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3786 (388 amino acids)

SeqID: GFF3786 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2632690: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3786
MAFSERVTRLKSSLIREILAAAQRPQVMSFAGGLPAEAMLPALDWDDMPLNIGQYGMSEG
EPQLRELLAAEARALGVPCQASQVLVVSGSQQALDLAAKLYIDKGTQVLLEGPTYLAALQ
IFQLFGADCLTVHLEADGPNLSALRASLERHRPAFIYLIPTFQNPSAVRYSEAKREAVAA
LLDEFGVTLIEDEPYRELTFDGGSAKPIVGRLKKASWIYTGTVSKTLLPGLRVGYLIASP
DLFAHLLKLKQSADLHTNRVGQWQAMQWIGSEKYQQHLVELRSFYRERRDAFQAALQRHF
ADLADWQVPQGGLFFWLTLKQPLDTRTLLAPALEQDVAFMPGEPFFSEPDQHPGSLRLNF
SHIDPARLDEGLKRLAAVVRQAQHAQAA