PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3793 (757 amino acids)

SeqID: GFF3793 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 131475: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3793
MLGTLRKIVQEVNAAKDLKAALGIIVLRVREAMGSQVCSVYLLDPETERFVLMATEGLNK
RAIGKVSMAPNEGLVGLVGTREEPLNLEHASEHPRYRYFAETGEERYASFLGAPIIHHRR
VMGVLVIQQKERRQFDEGEEAFLVTMSAQLAGVIAHAEATGSIRGLGRQGKGIQETRFIG
IPGAPGAGVGTALVVLPPADLDVVPDKHIDNIDAELTLFEAALEAVRADMRNLSEKLATQ
MRKEERALFDVYLMMLDDSALGGEVTKVIRTGQWAQGALRQVVREHVRRFEMMDDAYLRE
RASDVKDIGRRLLSYLQEARQQTLTYPDKTILVSEELSPAMLGEVPEGKLVGMVSVLGSS
NSHVAILARAMGIPTVMGAVDLPYSKVDGIELIVDGYRGEIITNPGKVLREQYEVLAEQE
RQLSEGLDVLRELPCETIDGHRIPLWVNTGLLADVVRAQERGAEGVGLYRTEVPFMIKER
FPSEKEQMAIYREQLEAFHPLPVTMRSLDIGGDKCLPYFPIKEENPFLGWRGIRVTLDHP
EIFLLQTRAMLKASAGLNNLRILLPMISGIGELEEALHLIHRAWCEVRDEGLDVHMPPVG
VMIEVPAAVYLTRELARQVDFISVGSNDLTQYLLAVDRNNPRVADLYDYLHPAVLEALQR
VVKEAHSEGKPVSICGEMAGDPAAAVLLLAMGFDSLSMNATNLPKVKWLLRQISMDTAQQ
LLARVMLLDSPQVIQSTVQLTLRNLGLDKLINPSAAV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory