PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3817 (433 amino acids)

SeqID: GFF3817 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600502: probable oxidoreductase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3817
MTPDRNRSLWQATCREDLDAAALHDDVSADLVVVGGGYTGCSAALRAAELGADVRLLEAE
TFGAGGSGRNVGLVNAGLWLPPKKINSVLGEVNGTRLSTLLAAAPAAVFELIKTHQIDCE
PIQTGTLHCAHARSGLKDLRKRHQQLTAIGAPVTLLSRGDAIARVGSDAVYGALFDPRAG
TIQPLAYAIGLARAAASQGARLHASSPVVGLTRETDGWRVSTPGGTVRARHLIMATNAYP
LPITGYTAPATIPVSYFQAATAPLPAGLAGRILPQAEGCWDTGLIMSSWRRDRAGRLIIG
GMGDLSHPARSVHTNWLRRKLAVMFPALADHPFEAEWAGKIAMTTEHIPKIIDLGQGFAC
FGYSGRGIGPGTVFGRRMAEALMHGDRSLLPIPVSDDHRLPFAGVRGTYYETGATLVHLL
AGRVGQTPTPTDQ

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory