PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3825 (558 amino acids)

SeqID: GFF3825 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [15 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 732104: Inner membrane protein yjiY]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3825
MSAIALLLVGLIAMALGYVFYSKFIAERIYRLDPHYLTPAHTMRDGVDYVPTNKFVLWGH
HFTSVAGAAPIVGPAIAVIWGWGPAFAWVIFGTIFFAGVHDFGALWASARSRGQSVGMLS
GRLIGARGRSLFLVVIFLVLLMVNGAFAAVISNLLVSTPTSVIPVWGAILVALVIGQMIY
RYNMKLLWPSLGGVIVLYALILLGNQYPVALPDEIMGLSAKSVWILLLFVYAAIASLLPV
WVLLQPRDYINGLQLFVGLGLLYLAVLFGAPELVAPAFNQELPADTPSIVPLLFVTIACG
AISGFHGLVASGTTSKQLDKETDARFVGYFGAMGEGMLSLAAIICCTAGFATLTDWQQVY
TAFGSGGVTAFVQGGGTLLANGLGLPAELGGTILAVMAILFAGTTMDTGLRLQRFVIQEA
GELAGMKVNTLIGTLIAVGVCMALAFGAGSDGTGGMVIWPLFGTTNQLLAGLTLAVITVI
LIKLGRSPLYTLVPLVFLLAMSIYALLVQMGQFYRAENWLLLGMDVIILIAALWVTLEAV
IAMRKGRDPAEQAFEAQP