PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3858 (662 amino acids)

SeqID: GFF3858 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597193: probable AMP-binding enzyme[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3858
MSNEEQSPVVWSPSEDTLANSRMGQFKAWLEQQGFGPFADYHALHQWSIDELETFWQKVW
DYCGLVCDTPAEKVLGKHEMPGAEWFPGMKLNFAANLLRLADGEHRDREAVVAYCETRPV
LRRTYAELKADAGALEAFLRSKGIKQGDRVAGVVTNGYEALVGMLAATSLGAIWSSASPD
FGIGAILDRFGQIEPSALIVVNGYGYGGKVFARQQDFAELIAGLPTLKAVVSVQQLPDEA
PISGDLVTTWENALAAGEGTAPSFTPLPPDHPVYILYSSGTTGKPKCIVHGNAGLLVNHA
KELMLHGDVGPEDRFLYFTTCGWMMWNWQASALMTGAAVITVDGSPGYPSLNFLWDTVAE
EKVTHFGTSARFIAGCRKGELKPAKTLDQSKLRVVFSTGSPLLPEDYDWVYSDGAPDALL
GSIAGGTDICGCFVGSTPLLPVRRGEIQCRFLGVDAVAYGDDGQPVSEGRGELVCRQPLP
SMPVSFWQDPDGERYRDAYFNTFPGVWAHGDFIEFTEHGGAIIYGRSDATLNPGGVRIGT
AEIYRQVETVAEVKDSLVVGRQIDGDVEVVLLVVPADGQEITDDLLKQLKSRIREGASPR
HVPKHIVEVNDIPYTRSGKKVELAVARLINGSKKADNRDALGNPEALDHIRERLSAVGLL
PE