PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3859 (747 amino acids)

SeqID: GFF3859 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1708408: Isocitrate dehydrogenase [NADP]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3859
MTSSKAKIVYTLTDEAPALATRSLLPILETYAKPAGIEFETSDISLAARILANFPDYLEE
DQRVPDALAELGEYTKDPDANIIKLPNISASIPQLRAAIKELNEQGYNVPEYKENPENDE
EKEIQSRYAKVLGSAVNPVLREGNSDRRAPTAVKAFARKYPHSMGEWSPASRTHVAHMRG
GDFYSSEQSVTLDKATKANIVFENKQGKQTVLKSDLPLQEGEVLDGMFMSKKALVKFFED
AIADCENTGVMFSLHVKATMMKISHPIVFGHAVKVFYKDLFDKYGELFDEIGVNPNNGLS
SVVEKIKQLPESKQEQIQEDLHACYEHRPEIAMVDSVKGITNLHVPSDVIVDASMPAMIR
NSGKMWARDNKLKDTKAVMPESTYATIYQEVINFCKTHGAFDPTTMGTVPNVGLMAQKAE
EYGSHDKTFEIKEDGVVRVVAEDGTVLTEHNVEKGDIWRACQTKDLPIRDWVKLAVNRAR
ATGMPAVFWLDDERAHDAQLIQKVNTYLKDHDTEGLDIRIMSPVRAIRWTMERLIRGLDT
ISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLLNGGGLYETGAGGSAPKHVQQLIQENH
LRWDSLGEFLATAVSLDELGEKQNNERARLLGQTLDKATERLLENNQSPSRVTGELDNRG
SHFHLARYWAEELANQDSDKELKEFFTKLSAQLEENKDKILEEMTVVQGNPADIGGYYHP
PMEKVCEVMQPSATLNRILEEARASVK