PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3871 (445 amino acids)

SeqID: GFF3871 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [2 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600502: probable oxidoreductase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3871
MRRIYEPLAYTDRPIRARYWDRFLPDPAPCYAPLQDEVTAEFAVIGGGYTGLSAALTLAE
AGADVVLLDAQRPGWGASGRNGGLVSVGSAKLADDAILRRYGQADAEQFFAAERAAVDLV
ETYVERLALEVDRHSRGYTFVAHRPDRLTELHDYGQEYTRRYGLSYEFIPKEEMAAHGLN
SPEFHGAVNLPVGFALNPMKFVLGLTRAVEAAGVRMFSDTPVQAITPAAGGYLLQGPAGQ
VRARHLLIATNGYSSDDLPQALAGRYLPVQSNIMVTRPLSEAEIADQGWWSEQMVCDSRT
LLHYLRLLPDRRLLLGLRGSVRVSEENIAVTKARARADFDRMFPAWRAVETAHFWSGLIC
MTRNLVPFAGAIPGMKNAWAALGYHGSGVCMAPYAGALIADQALGRHQRPHPDLMQRPLR
RFELGRWRRLSLPLAFGWYHIKDRI

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory