PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF39 (438 amino acids)

SeqID: GFF39 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597279: probable ring-hydroxylating dioxygenase subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF39
MRVLSDREIYQLEMEKVFGKTWLMLGHESEIPNPGDFMVRDMGEDSVIVTRDKSGEVHVL
LNVCPHRGMRVALTDCGNSQIHKCIYHGWAFRPNGDFIGAPVEKEKMHGSMLEKSELGLK
RARCTLYGGLIFATWNIEGPSFDEFLGDAKWYYDMLFLRSDKGMEVLGPPQRFIVNANWK
TAGEQSAADGFHTLTLHRWLGEIGNYSKKGEGEGDGADLSPEMYGVEVSSPHGHALRCID
LARKIRRITGLDPEKLSVEEKLEALPPAGMTVEMVDQLKRNLSEDQLKVLTSMPPQVGGM
FPNILFGFVYIPQPDGSVVGSMTMHTYIPRGPDKLEFCNWIFAEKDAPPELRQKMLEQTV
QLFGTSGMVEQDDSDTWPHMTLSAKGAMGKHITMKYQAVYETGAPEGWPGPGIVNEGFTK
DDTQWHWWLYWNELMNAD