PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3930 (432 amino acids)

SeqID: GFF3930 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600397: N-acetylglutamate synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3930
MHDYVTWLRDSSPYINSHRDRTFVVMLPGDGLEHANFANIVHDLVLLHSLGVRLVLVFGS
RPQIEARLAARGIEPRFHRDLRVTDAPTMECVIDAVGQLRIALEARLSMDMAASPMQGAR
LRVAGGNFVTARPIGVLDGVDLHHTGEVRRIDRKGIGRLLDERTIVLLSPLGYSPTGEIF
NLACEDVATRAAIDLQADKLVLYGAEPGLLDESGKLVRELRPQQIPAYVERLGSQYQAEL
LDAAAQACRGGVRRSHVVSYADDGALLNELFTRDGGGTLVTQEQFEQLREATIEDVGGLI
DLITPLEEQGILVRRSREVLEREVEQFSIVERDGLIIACAALYPIADSDAGELACLAVNP
EYRHGGRGDELLERIEERARKLGLKKLIVLTTRTAHWFRERGFEPISVDRLPAARASLYN
FQRNSKIFEKPL