PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3941 (367 amino acids)

SeqID: GFF3941 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    4.90
    Periplasmic            2.50
    Extracellular          2.50
    OuterMembrane          0.10
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3941
MKRRDILTAAGVGLAATALAGCNDKSDKPVAGESKQAEQQTFNWKMVTSWPKNFPGVGVG
AERFANLVNEMSGGRLKIKVYAAGELVPALEVFDAVSRGTAEMGHGAPYYWKGKVPAAQF
FCALPFGPNAQEMNAWLHRGGGMQLWEEVYKPYGVLPMACGATGVQTAGWFNKEINSVDD
FKGLKMRTPGLGGEVLTKMGGTVVNMPAGEIFTALQTGAIDATEWIGPYNDLALGLHKAS
KYYYTPGWQEPNVTFELDVNLKAWDTLPDDLKAIVRAAARDVNGDMLDDYNAKNMEALEQ
LREQGVEVRRLPDEVLARLKEVAAEVVDASAKADPVASKVWEQQSAYLKRLYDYAELNEK
DIYNIRG