Running PSORTb v3.0 on GFF3941 FitnessBrowser__Phaeo:GFF3941 (336 amino acids)
SeqID: GFF3941 FitnessBrowser__Phaeo:GFF3941 Analysis Report: CMSVM- Unknown [No details] CytoSVM- Unknown [No details] ECSVM- Unknown [No details] ModHMM- Unknown [No internal helices found] Motif- Unknown [No motifs found] OMPMotif- Unknown [No motifs found] OMSVM- Unknown [No details] PPSVM- Unknown [No details] Profile- Unknown [No matches to profiles found] SCL-BLAST- Unknown [No matches against database] SCL-BLASTe- Unknown [No matches against database] Signal- Unknown [No signal peptide detected] Localization Scores: OuterMembrane 2.00 Extracellular 2.00 Cytoplasmic 2.00 Periplasmic 2.00 CytoplasmicMembrane 2.00 Final Prediction: Unknown -------------------------------------------------------------------------------
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in the ENIGMA genome browser
>GFF3941 FitnessBrowser__Phaeo:GFF3941 MKTALITGSAGFIGYHLADRLLAAGWRVIGLDCLSPYYDVRLKECRHARLAEYAGFTPII GKLEDPDRLMGLFATHKPDAVIHLAAQAGVRHSIDAPRDYLEANLIGTFELLEAARAHPP AHMLIASTSSAYGANTQMPFDERQQADHQMSFYAATKKAGETMAHSYAHLYGLPTTMFRF FTVYGPWGRPDMALFKFTQAMQAGQPIDVYNHGRMSRDFTYIDDLVAGITGLIDAVPGDQ PVSEQDNLSPVAPFRVVNIGASRPTPLMEYIAALETALGITAQKNLMEMQPGDVPATWAD TSLLNQLTGYEPQVPVEEGVARFVTWYRAYYGDAQG
Lawrence Berkeley National Laboratory