PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3991 (329 amino acids)

SeqID: GFF3991 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 549204: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3991
MRITLFSSKAYDRDSFLAANQAHGFDLHFLETRLDPDTAALAAGAEVVCPFVNDVLSAPV
LERLAAGGTRLIALRSAGYNHVDLPCAKRLGLPVVRVPAYSPHAVAEHTVALILALNRRL
PRAYNRIREGNFSLQGLTGFDLVGKRVGVVGSGQIGAVFARIMLGFGCEVQLYDPYPNPE
LERLGMRYVALDELLASSDIVSLHCPLTAQTHHLINQQSLATMKPRAMLINTGRGALIDT
PALIGALKSGQLGYLGLDVYEEEAGLFFEDHSGLPLQDDVLARLLSFPNVIVTAHQAFLT
EEALSAIAGTTLGNVAAWQAGQTSNQVSD