PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3995 (599 amino acids)

SeqID: GFF3995 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600628: probable transcarboxylase subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3995
MTKRKIHITDVILRDAHQSLIATRMRTEDMLPACEWLDQAGYWSLECWGGATFDACVRFL
KEDPWERLRTLRKALPNTRLQMLLRGQNLLGYRHYGDDVVEAFVAKAAENGMDVFRIFDA
LNDVRNLETSIKAVKKAGKHAQGTICYTVSPVHGTDAYLEQAKAMADMGADSIAIKDMAG
LLTPAVTAELVGKLKQTLNLPVFLHSHATSGMAPMCQWAAMEAGVDHIDTALSAFAGGTS
HPPTESLVAALHDAGLETGLNLELLDKATRHFREVRKKYHQFESAYNGVDTSVLLSQVPG
GMMSNLANQLKEQGALDRIQDVFEEIPRVRKDLGYPPLVTPTSQIVGTQAVINVLAGKRY
ESITNEVKKYLQGWYGKAPAAVDKSLQQRAVGKEDLIEERPANLIPRELDELRKQVGELA
TSEEDVLTYAMFPDQAKAYLEQRRDGTLQPEPLEPIPTGSSGGSVSSKFKITVHGESYDI
HVTGANPSGENERRFYMTVDGVPEEIHLASLGEDGEGARSSGGRATATKEGHVTTSMPGN
IVDVLVKEGDEVQAGDPVLIIEAMKMETEVKATTAGKVSGVFIAKGDRVVPGEVLVEID

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory