PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3998 (641 amino acids)

SeqID: GFF3998 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 126951: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3998
MKRSIATVSLSGTLPEKLEAAAAAGFDGIELFENDLLYHSGSPLDVRRRCEELGLAVTLF
QPFRDFEGCPRERLQRNLDRAERKFDLMQELGAELMLLCSNVQADALGDRETLLGDLGLI
AERAGARGLRVGYEALAWGRHVKTWRDVWTLVQQVDHPALGVILDSFHTLALGDDPSGIV
EIPGERIFFVQLADAPVLAMDVLEWSRHFRCFPGQGEFDLAGFLAPVLQAGYSGPLSLEV
FNDGFRAAPPRGIAADGLRALRHLEEKTGQRLSASAPSAAVVPSLFTAPAAPRYEGIDFL
EFAVDEPHAVRLGSWLQQLGFAHVGQHRSKDVQLFRQGEINIVLNAEPYSFAHNYFEAHG
PSVCAMALKIDDEASALARACAFGGQPYRGLIGPNERQIPAVRAPDGGLIYLLESGAPGQ
SNYDIDFRLHAVTPAGAGLQRIDHMATALPAESLASWVLFYRSLFDFEADDELLLPDPYG
LMKCRAMRSPCGRVRLPLNTSQDRDTVIAQALSSYRGAGVHHVAFACDDIFAEVARAQAA
GVPLLQIPRNYYDDLAARFDFDDSLLAELARYNVLYDRDAEGGELFHVYTEPFEGRFFFE
ILQRCNGYAGYGTPNVAVRLAAMAKQCRRTAPAATALASAS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory