PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF4068 (397 amino acids)

SeqID: GFF4068 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15599399: periplasmic gluconolactonase, PpgL[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF4068
MTTLTRGNWPTLLRLVFALLVGALLAGGARAETDDMHILIGSYTHDSDSPGILRLRFDPA
TGQIDPKPVQTLTSDNPSWLVLDDKRGRLYATNENGPAHADPVGRVSAWQLDSSSEHQLI
GQNISLGDEPTHASLSHDGRYLFISNYGSRPNPGGSLAVMPLAEDGHPLPVTQILAHQSS
GVHPERQRSAHVHSAVPSPDGKRLLVSDLGADRVFVYRYDPQNAERPLQADEPASIELPP
GSGPRHLVFHPNGKHAYLALELSAQVASFDYTNGTLTRRQLLDLKDAGNDVRHSPGAIHS
SADGRFLYVSDRGDYNHIIVFAIEADGTLREIQRRSSEGREPREFAITADGRFMLIANQL
SDELVVIRRDPDSGQLGEKLQTLTVGRPSDIKLLAPN

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory