PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF4089 (353 amino acids)

SeqID: GFF4089 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600429: probable aromatic hydrocarbon reductase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF4089
MSHTVTIEPIGEQIEVEDGQTILQAALRQGVWLPFACGHGTCATCKVQVLEGDVEIGDAS
PFALMDIERDEGKVLACCATVESDVTIEADIDVDPDFEGYPVEDYTATVTGIVELSPTIR
GVHLKLDRPMTFQAGQYINIELPGVDGARAFSLANPPGKADEVELHVRLVEGGAATTYIH
EQLKTGDALNLSGPYGQFFVRSSQPGDLIFIAGGSGLSSPQSMILDLLEQNDERKIVLFQ
GARNLAELYNRELFEALDRDHDNFTYVPALSQAEEDAEWQGFRGYVHDAAKAHFDGRFAG
NKAYLCGPPPMIDAAITALMQGRLFERDIFMEKFLTAADGAEDTQRSALFKKI