PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF4111 (494 amino acids)

SeqID: GFF4111 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595989: propionate catabolic protein PrpD[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF4111
MSANVDQNNRPDYDQLLQDIADYVLNYRIDSRDALDTARNCLMDTLGCGLLALRFPECTK
HLGPIVEGTVVPFGARVPGTSFRLDPVKAAWDIGCIVRWLDYNDTWLAAEWGHPSDNLGG
ILAVADHLSQKRVANGDVPLTVRAVLEAMIMAHEIQGVIALENSFNRVGLDHVLLVKVAS
TAVTAKLMGANREQLLAALSHAFVDGQALRTYRHAPNAGSRKSWAAGDASSRGVRLADIA
MRGEMGIPGVLSAPQWGFYDVLFSHTNKDLALKPEDRRAFSLSQPYGTYVMENVLFKISF
PAEFHAQTACEAAVTLHPWVKDRLHEIDRIVITTHESAIRIISKVGQLANAADRDHCLQY
MTAVPLAFGNLVAEQYEDEFHAAHPIIDQLRDKMVIVEDPRYSREYLEADKRSIANAVQV
FFKDGSCTEQVAVEYPIGHRRRRVEGIPLLEDKFKANLATRFTGQRSAEIFALCKDQARL
EATPVNRFVDLFVI