PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF4114 (375 amino acids)

SeqID: GFF4114 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 3123196: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF4114
MAEAKVLSGAGLRGQVAGQTALSTVGQAGAGLTYRGYDVRELAADAQFEEVAYLLLYGEL
PTQTELAAYSAKLSKLRDLPQALKEVLERIPADAHPMDVMRTGCSFLGNIEPEKDFSVQR
DVTDRLLAAFPAIMCYWYRFSHDGKRIDCVTDEPSIGGHFLHLLHGKKPSELHVKVMNVS
LILYAEHEFNASTFTARVCASTLSDLYSCVTAAIGSLRGPLHGGANEAAMEMIERFSSAE
EAVEGTLGMLARKDKIMGFGHAIYKDSDPRNEVIKGWSKKLADEVGDKVLFPVSEAIDKT
MWEQKKLFPNADFYHASAYHFMGIPTKLFTPIFVCSRLTGWAAHVFEQRANNRIIRPSAE
YTGVEQRKFVPIERR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory