PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF4143 (401 amino acids)

SeqID: GFF4143 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 135750: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF4143
MTQALIFDAIRTPRGKGKADGALHSVKPVNLVAGLLTALARRSDLDTHQVDDIVLGCVTP
IGDQGADIAKTAALVADWDISVAGVQINRFCASGLEAVNVGAMKVRSGFEDLVVVGGVES
MSRVPMGSDGGAWVLDPQTNMHSHFTPQGIGADLIATLEGFTRDDVDAFALHSQQKAARA
RADGSFNKSLIAVQDQNGIVLLDHDEFIRGDSTLEGLGKLKPSFEMMGQMGFDATALRVY
SHVERIHHVHTPGNSSGIVDGAALMLIGSEAKGRELGLQPRARIVATAVTSTDPTIMLTG
PAPATRKALAKAGLRIEDIDLFEVNEAFASVVLKFIKDMGIDAARVNVNGGSIAMGHPLG
ATGCAILGTLLDELEVRQQRYGLATLCVGGGMGIATIIERL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory