PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF4151 (938 amino acids)

SeqID: GFF4151 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599966: probable ferredoxin[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF4151
MTFTPEVLANIRQRIPENRVFNDPMSTLAFGTDASFYRLIPKVVVRVQDEAEVVDLLAIA
RRHKVPVTFRAAGTSLSGQAISDSILIVLGDQWNGHDIREEGRQIRLQPGVIGAQANAWL
APKGFKIGPDPASINACKIGGIVANNASGMCCGTAQNSYHTLAGMRLVLADGAVLDTEDP
ASVSAFRDSHGDLLAALKKLAINTRENPELAERIRHKYRLKNTTGLSLNALVDFTCPLDI
LTHLMVGSEGTLGFVSAVTYNTVPEYPDKATALLVFRDAESCCRAASALRSQPVAAVELL
DRRSLRSVQYKPGLPDWIHDLSESACALLVETRASSSEILDEQLTRIRQALAEFPLEQQV
DFTRDAKVSDQLWAIRKGTFPAVGAVRPNGTTVIIEDVTFPIDQLSEGVTRLQALFVKHG
YDDAIIFGHALEGNLHFVFPQGFDDPAEVARYEAFMQDVAQLVAVEFGGSLKAEHGTGRN
MAPFVELEWGHDAWQLMWQIKRLLDPENLLNPDVVLSEDPQIHLKNLKPLPEADPLVDKC
IECGFCEPVCPSEGLTLSPRQRIVIWRDIQARRRVGEDTAELEKAYQYHGLDTCAATGLC
AQRCPVGINTGDLVRKLRSEKATGQSMANQLAKHFAGALKATRFVLASASMAERLLGAPL
LTRLSGGVRKVSGGRVAQWDPSLPQPVRFVSPKAPEPSDGRPRVVYLAACVSRTMGPARG
DKAQEPLIDVTRRLLEKGGYQVVYPEALDSLCCGQPFASKGYPNQAATKKDELISALLRA
SRNGVDPIYCDTSPCTLQIREAAEEAGLTLFDPVRFIRDHLYERLDFEPEQTPLAVHVTC
STQHLGESQGLIDIARRCSTQVVVPEGIHCCGFAGDKGFNVPELNAHSLKTLAEQTAGCE
EGISTSRTCEIGLSRHSGIDYHGLVYLVDRVTRPRATA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory