Running PSORTb v3.0 on GFF4158 FitnessBrowser__WCS417:GFF4158 (249 amino acids)
SeqID: GFF4158 FitnessBrowser__WCS417:GFF4158 Analysis Report: CMSVM- Unknown [No details] CytoSVM- Unknown [No details] ECSVM- Unknown [No details] ModHMM- Unknown [No internal helices found] Motif- Unknown [No motifs found] OMPMotif- Unknown [No motifs found] OMSVM- Unknown [No details] PPSVM- Unknown [No details] Profile- Unknown [No matches to profiles found] SCL-BLAST- Unknown [No matches against database] SCL-BLASTe- Unknown [No matches against database] Signal- Unknown [No signal peptide detected] Localization Scores: Extracellular 2.00 Cytoplasmic 2.00 OuterMembrane 2.00 Periplasmic 2.00 CytoplasmicMembrane 2.00 Final Prediction: Unknown -------------------------------------------------------------------------------
PaperBLAST (search for papers about homologs of this protein)
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Predict transmembrane helices and signal peptides: Phobius
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>GFF4158 FitnessBrowser__WCS417:GFF4158 MKVLVAVKRVVDYNVKVRVKADNSGVDLANVKMSMNPFCEIAVEEAVRLKEKGVATEIVV VSIGPTTAQEQLRTALALGADRAILVESAEELTSLAVAKLLKAVVDKEQPQLVILGKQAI DSDNNQTGQMLAALTGYGQGTFASKVEVNGDSVAVTREIDGGAQTVSLKLPAIVTTDLRL NEPRYASLPNIMKAKKKPLESLTPDALGVSTASTNKTVKVEAPAARSAGIKVKSVAELVE KLKNEAKVI
Lawrence Berkeley National Laboratory