PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF4204 (578 amino acids)

SeqID: GFF4204 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF4204
MRLDQISASARPFNNKNRNEQVKKMDTGITLNPERRAAMIKSGAWNDKIITDYFDQAVAS
TPDREAIVGYQVTSDTRNALTYRELNDKVTRMAAGLAAMGIGKGEVVACQLPNWWQTTAL
HLACMRIGAILNPLMPIFRERELRFMLKHGEAKLLVIPKVFRDFDYEAMVDGIRGELPAL
ETLLVIGGEGERSFEQRLMETPWEKQQDITSLFAERQLTADDAIQILYTSGTTGEPKGVM
HTSNTLFSNVRPYADRLHLTSDDKVLMASPLAHQTGFMYGIMMPVYLGTTAILQDIWDAD
YVCKVIGAEKPAFTMAATPFLADLVKTAPKHEGELDSLRIFVSAGAPIPSAVVEQAGKVL
KAKIVSAWGMTENGAVTMTCPEDPAERASQSDGKAMPFMEVKVTDFQGNELPAGEEGSLL
VRGSSLFVGYLKRPELYGVDESGWFNTGDLARMDQDAYIRITGRTKDVVIRGGENIPVVE
VENLLYKFPGIVDVALVGCPDERLGERLCAYVTLDENATDLTLEQVKTYLTEQQLSKNYL
PEYLEVIEAMPRTASGKIQKFKLREQARNVRLEPNKHH

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory