PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF4213 (452 amino acids)

SeqID: GFF4213 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595493: probable glutamine synthetase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF4213
MSIQLDQLTGWLKEHKITEVECLISDLTGIARGKISPTNKFLGEKGMRLPESVLLQTVTG
DYVEDDIYYELLDPADIDMFCRPDPNAVFLVPWAIEPTAQVIHDTYDKMGNPIELSPRNI
LKRVLKMYADRGWQPIVAPEMEFYLTKRCEDPDLPFQPPIGRSGRQETGRQSFSIDAANE
FDPLFEDMYDWCEAQGLDLDTLIHEEGTAQMEINFRHGEALHLADQILVFKRTMREAALK
HNVAATFMAKPMTGEPGSAMHLHQSVIDRNTGRNIFSNEDGSMSQLFLHHVGGLQKYIPE
LLPMFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDSDPQNRRVENRLAGADANPY
LAIAASLLCGYIGMVEQLPPSQPVKGRGYERRNLRLPLTLEAALERMETCRELEKYLSPK
FITGYVAVKRAEQENYHRVISSWEREFLMLSV