PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF4234 (966 amino acids)

SeqID: GFF4234 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16131905: formate dehydrogenase-H, selenopolypeptide subunit [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF4234
MLQYFDPDTSGLNPNIDYGTPPSNSETLVSLSIDGTDIAVPEGTSVLRAATLAGINIPKL
CASDNLEAFGSCRMCAVEIEGRRGYPASCTTPVSEGMTVTTQNAKLAKLRRNIMELYISD
HPLDCLTCPANGNCELQDVAGAVGLREVRYGFEGENHLDVEVDDSNPYFSFDPSKCIVCS
RCIRACEEVQGTFALTIDGRGFDSKVSAGQNDPFMDSECVSCGACVQACPTSTLMEKSVI
DAGQPEHSVVTTCAYCGVGCSFKAEMKGDQLVRMVPYKGGDANQGHSCVKGRFAFGYATH
KDRIKEPMIRESIDDPWQVVTWEEAIEFSAKKLKDTQARYGRESIGGITSSRCTNEETYL
VQKLIRAAFGNNNTDTCARVCHSPTGFGLKTTMGESAGTQTFDSVMKADTIVVIGANPTD
AHPVFASQMRKRLRQGAKLIVIDPRRIDLLKTPHGTEGIHLPLRPGTNVAMINSLAHVIV
TEGLEDKGFIESRCELKQYNQWRDFIAEERHSPEALEVVTGVSADLVRQAARAYGEAHNG
AIYYGLGVTEHSQGSTMVMGIANLAMATGNIGREGVGVNPLRGQNNVQGSCDMGSFPHEL
PGYQHVGDSAVRTKFQDAWNVVIDNEPGLRIPNMFDAAIAGSFKAMYVQGEDIAQSDPNT
QHVEAALSSLDCLIVQDIFLNETAKYAHVLLPGSTFLEKNGTFTNAERRINRVRKVMAPV
AGMEDWEVTMALSNALGYPMHYNHPSEIMDEIARLTPTFTGVSYDRLDDLGSIQWPCNDE
HPDGTPTMHTLDFPIGKGKFAVTEYVATEEKTNRKFPLLLTTGRILSQYNVGAQTRRTEN
SQWHSEDVLEIHPSDAELRGVREGDWLGVSSRVGQTVLRARISDRMLPGVVWTTFHHPGS
GANVITTDSSDWATNCPEYKVTAVQVEKVSQPSAWQRHFAQFDERQHQLLDSKAGEEERS
DVASFE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory