PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF4309 (562 amino acids)

SeqID: GFF4309 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2506182: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF4309
MQPDFWNDKRAAGVPNDIDLSAYKSVIEVFERSCKAFADRPAFSNMGITLTYAELERQSA
AFAGYLQQHTDLKPGDRIAVQMPNVLHYPIAVFGALRAGLIVVNTNPLYTPREMRHQFKD
AGVRALVYLNLFGSRVQEVCSDTEIDYLIEARMGDFMPTAKGWLVNTLVDKVKKMVPAYS
LPRAVAFKRALHMGAGLGVTRHPVTLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMQQVR
ACMSQTGDDGHPLIKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIGGFI
KELKKWRFTGLLGLNTLFVALMDHPDFKSLDFSHLKLTNSGGTALIKATAERWQQITGCA
IGEGYGLTETSPVASTNPYGNKSRLGTVGIPVPATAMKVIDDHGVELPLGERGELCIKGP
QVMKGYWQQPEATAEALDAEGWLKTGDIAVIDEEGFVSIVDRKKDLIIVSGFNVYPNEIE
DVVMAHPAVANCAVIGVPDERTGEAVKLFVVARAEGVSLEELKAYCKTNFTGYKVPKHIV
LRDSLPMTPVGKILRRELRDIA