PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF4361 (613 amino acids)

SeqID: GFF4361 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 3915705: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF4361
MCGIVGAVSAGDVTPFLLNGLNTLEYRGYDSAGLALLNDGLRRARAVGRVSELESLVAQD
ALAGRLGIAHTRWATHGVPAERNAHPHVSGGLAVVHNGIIENYGELREQLKALGYEFTSD
TDTETIAHLIQAYLESKLGSSSNSLFGAVREAVKHLKGAFALAVIREDEPDTLVLAREGS
PLMLGIGNDGYFAASDASALVGETRRLMYLENGDVAQMTRQAVTIVDGSGRAVEREEVIS
TIAADAVQLGEFNHYMQKEIFEQPQALGNTLEMLGGVEGVQAGLLGADAEQTLDLVDSVL
ILACGTSSYAGMVARYWVEAIASIPCSVEIASEYRYRQSVPNERQLIVVISQSGETADTI
AALEHAKSLGHRHTLAICNVPESAIVRQAALRFITRAGPEIGVASTKAFTTQLATLFLLT
LLLAKARGTLDASDEQRYLGEIRHLPVAVEKVLSLEPSIRKLAQRFSQKRHALFLGRGRH
YPIALEGALKLKEISYIHAEAYPAGELKHGPLALVDDDMPVVVVAPNDQLLEKLKANMEE
VRARGGELYVFADGDTRVTSASGLHVLRMPEHYGELSPVLHVVALQLLAYHVALVKGTDV
DKPRNLAKSVTVE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory