PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF440 (467 amino acids)

SeqID: GFF440 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 121356: Glutamine synthetase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF440
MSKTVDLIKEHEVKWVDLRFTDSRGKEQHVTLPATEVDEDFFADGKMFDGSSIAGWKGIN
ESDMILMPDDETSVLDPFTEETTVNITCNIVEPSTMQGYERDPRSVARRAEEYLKSTGIA
DGALFGPEPEFFVFDSVKWNVDMQGAMYHIHSEEAAWVSGEDFDRNNIGHRPGVKGGYFP
VPPVDSLHDLRGAMCAAMESMGLDIEVHHHEVGTAGQCEIGVGANTLTKKADEVQILKYC
VHNVAHAYGKTATFMPKPVVGDNGSGMHVHMSLSKDGKNLFAGDSYAGLSEAALYYIGGV
IKHAKAINAFTNSSTNSYKRLVPGFEAPVMLAYSARNRSASIRIPYVNSPKARRIEVRFP
DPSANPYLAFAALMMAGLDGIQNKIHPGDAMDKDLYDLPKEEALSIPTVAETLSEALDCL
EADHEFLTRGGVFTEDMIAGYVGLKRGEVEKLNMTTHPIEFDLYYSC