PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF4402 (405 amino acids)

SeqID: GFF4402 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 584772: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF4402
MAVGLGPLPTLHPVAGFELGIASAGIKRPGRKDVVVMRCAEGSTVAGVFTLNAFCAAPVI
LAKQRVAGTIRYLLTNTGNANAGTGEPGLVAAARTCAKLAQLTGVDASQVLPYSTGVIGE
PLPVEKIEGALQAALDDLSVDNWAAAATGIMTTDTLPKGASRQFVHDGVTVTVTGISKGA
GMIRPNMATMLGYIATDAKVSRDVLHRLILDGANKSFNRITIDGDTSTNDCCMLIATGQA
NLPEITEASGPLFAALKQAVFEVCMEVAQAIVRDGEGATKFVTVEVNGGGNHQECLDVGY
TVAHSPLIKTALFASDPNWGRILAAVGRAGVPDLDVSKIDVFLGDVCIASRGARAETYTE
AQGSAVMQQEEITIRIELGRGECSETIWTTDLSHEYVKINAEYRT