PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF4425 (536 amino acids)

SeqID: GFF4425 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 416604: Alcohol dehydrogenase [acceptor]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.15
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF4425
MKSADYIIIGGGSSGCTLAGRLSENPRSEVALLEAGPDRGSSALIRTPAAVVAMVPRKVN
NWAFETTPQPGLNGRRGYQPRGRVLGGSSAINAMAYIRGHASDYDAWEAAGNEGWGFNDV
LPYFKKSEANQRFHDDWHGNSGPLKVSDLQSDNPFQKHYLEAARQVGYPITEDFNGPQQE
GIGLYQVTQLNGERWSAYRAYIEPHRSSRRNLSIHTEAIAQRIVFEGKRAIGVEFTRRGR
LEYIRARKEVILSAGAFQSPQLLMLSGIGDKAELSEKGIEVMHHLPGVGKNLQDHPDFIF
GYRSNDSNLLGLSLKGGMHGIRQFIKYRQTRRGLLASNFAEGGGFLKTSPELEAPNIQLH
FVVALVDDHARRLHRGHGFSCHVCLLRPKSRGTVVLKNNNPASPPVIDPGFLNDANDVEE
LVDGYKMTRRLMAAPALAKFCTEDPFTANVKTDKQIIDILRNRTDTVYHPVGTCKMGTSK
DSVVDPRLRVYGVEGLRVVDASIMPTIIGGNTNAPAIMIAEKAADLIAEDADDTQS