PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF4483 (393 amino acids)

SeqID: GFF4483 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 1171003: Probable phosphoribosylglycinamide formyltransferase 2]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF4483
MTRIGTPLSPTATRVLLCGCGELGKEVVIELQRLGVEVIAVDRYANAPAMQVAHRSHVIN
MLDGAALRAVIEAEKPHFIVPEIEAIATATLVELEAEGFTVIPTARATSLTMNREGIRRL
AAEELDLPTSPYHFADTFEDYSKAVQDLGFPCVVKPVMSSSGKGQSLLRSPDDVQKAWDY
AQEGGRAGKGRVIIEGFIDFDYEITLLTVRHIGGTTFCAPVGHRQEKGDYQESWQPQAMS
PIALAESERVAKAVTEALGGRGLFGVELFIKGDQVWFSEVSPRPHDTGLVTLISQDLSQF
ALHARAILGLPIPLIRQFGPSASAVILVEGQSTQTAFANLGAALSEPDTALRLFGKPEVN
GQRRMGVALARDESIEAARAKATRASKAVVVEL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory