PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF456 (473 amino acids)

SeqID: GFF456 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF456
MIHPVIMAGGTGSRLWPMSRQLNPKQFLKLTNGPLSMLQATVARLEGMDAANPLLICNEE
HRFLAAEQMRQSGHEDTRIILEPCGRNTAPAIALAALQLTEAAENGADDPLMLVLAADHL
IKDVTAFQEGVKKAIPLAREGKLVTFGIVPNHPETGYGYIHRGTELGPDSYLVDKFVEKP
DQATANGYLDSGEYLWNSGMFLFGARQYLEELEAHRPDILAACRAAIADTADDLHFTRIN
AERFAECPSDSVDYAVMEKTDKAAVVSLDAGWSDIGSWSALWEVSDKDADGNSLTGDVIT
HNTANTLIRADSRLVATVGVDNLVVIETKDALLVAHKDSVQDVKTVVERIKTDGRHEHMN
HREVYRPWGVYDSIDNGARYQVKRITVKPGAKLSVQMHHHRAEHWIVVSGTARVTNGEKT
YLVTENQSTYIPVGQVHSLENPGVIDLELIEVQSGSYLGEDDIVRYEDRYGRK