PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF4563 (416 amino acids)

SeqID: GFF4563 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 39932236: Taurine--pyruvate aminotransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF4563
MSHETISQSISIVHPISLSHGKNAEVWDTSGKRYIDFVGGIGVLNLGHCHPGVVDAIRDQ
ATRLTHYAFNAAPHAPYVELMDRLTAFIPVDYPISGMLTNSGAEAAENALKIVRGATGRT
AVIAFDGAFHGRTLATLNLNGKVAPYKQKVGVLPGPVYHLPYPSADNGVTCAEALKAMDR
LFSVEIDVSDVACFIIEPVQGEGGFLALDIEFAQALRRFCNENNILLIADEIQSGFGRTG
ERFAFSRLGIEPDLILLGKSIAGGVPLGAVVGRKALMDNLPKGGLGGTYSGNPIACAAAL
ATLDAMTDEHLSAWGSQQEEAIVSRYQTWRAHGLTPYLGRLTGVGSMRGIELANADGTPA
PKQLTQLLGLARDAGLLLMPSGKSRHIIRLLAPLTIEPAVLEEGLTMFEACLKQLD