PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF475 (768 amino acids)

SeqID: GFF475 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 131475: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF475
MLSILRSLVQEVNSARDLQEALDIIVSRVQKAMGTEVCSVYLLDPATNRYILMATEGLYR
KAVGQVSLAYSEGLVGLVGSREEPINLEDAPSHPRYRYFPETGEERFRSFLGVPIIHHRR
VLGVLVVQQRESSRCFDEGEEAFLVTVSAQLAGVIAHSEATGAISGLSLTGEEAHDVSFN
GVPGAPGVAIGNGVVVYPSADLDVVPEKPTDDIDQELALFGASVKAVREDIERVAKRLAS
QLRPEEQALFDVYLRMLGDDAMPGEVSNKIREGIWAQGALKQVVQQYIRHFEMMDDHYLQ
ERAVDIRDLGRRLLSHLQEGEQKHLNYPERTVLVSEELTPAMLGEVPKGQLVGLVSVKGS
SNSHVAILARAMGVPTVMGLVDIPVNQLDGKELIVDGFEGQIFASPSADLRSYYQAICDE
EDELIRGLEVLKDKPCETTDHHRVSLLVNTGLMTDVVRSLSHGAEGIGLYRTEVPFMIKD
RFPSEQEQREYYREQLEAFAPSPVTMRTLDIGGDKALTYFPIQEENPFLGWRGIRVTLDH
PEIFLVQVRAMLKASEGLNNLQIMLPMISNISEVEESLHLIYRVYHEVREEGYDIHMPKV
GVMVEIPAAVYQIRELADRVDFLSVGSNDLTQYLLAVDRNNPRVAQLYHSYHPAVLQALV
RIAQDAHSVGKPVGICGELAGDPGGALLLMAMGYDSLSMNAASLPKVKSVIRSVSREWAI
QLLEDVLLLDSPHVIKSCVDLALRNAGFGRYLRPGKSTAMAVSEAAVS