PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF4778 (633 amino acids)

SeqID: GFF4778 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 126951: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF4778
MQRSIATVSLSGTLPEKLEAIAAAGFDGVEIFENDLLYYDGSPREVRQMCADLGIAITLF
QPFRDFEGCRRDRLARNLERAERKFDLMQELGTDLVLVCSNASADCVGDERILLDDLSLL
AEHAGRRGLRIGYEALAWGKHVNTWQQVWNLVRQVDHPNLGVLLDSFHTLSLKGDPSAIA
EIPGDKIFFVQMADAPILAMDVLEWSRHFRCFPGQGEFDLAGFLAPIIKSGYTGPLSLEI
FNDGFRAAPTRANAADGLRSLLYLEEKTRERLQQEAPAQPLDILFDTPAASEYDGIEFLE
FAVDESLGAKLTYWLERLGFVKAGQHRSKSVSLLRQGDINLILNCEPYSFAHNFFEAHGP
SLCATAIRVKDSAKALERAMAYKGQPYRGLVGPNELELAAVRAPDGSLIYLVDPSEGGLY
DTDFNLQPAASSSGGLLRIDHMAMALPADSLDSWVLFYKSLLDFEADDEVVLPDPYGLVK
SRALRSRCSSIRLPLNISENRNTAISHALSSYRGSGVHHIAFDCADIFAEVRRAKEAGVP
LLDIPLNYYDDLAARFDFDDEFLSELAYYNVLYDRDAQGGELFHVYTEPFEGRFFFEIIQ
RKNGYAGYGAANVAVRLAAMAKSRSGAVRQARL